# !!!!!!!!!!

# Uue rocker image juures vajalikud installimised.
cont_name=shiny-r-studio
docker exec -ti -u 0 ${cont_name} sh -c ' \
apt-get update && \
apt-get install -y --no-install-recommends \
libpq-dev libcairo2-dev libxt-dev libxml2 libxml2-dev \
libglpk-dev imagemagick'

# imageJ installimine
# Lae all Fiji.app https://imagej.net/Fiji/Downloads
fiji_name=fiji-linux64-20170530.zip
wget https://downloads.imagej.net/fiji/Life-Line/${fiji_name}
unzip ${fiji_name}
ln -s Fiji.app/ImageJ-linux64 ImageJ-linux64

# test https://imagej.net/Scripting_Headless
./ImageJ-linux64 --ij2 --headless


# Proovi käsk piltide konvertimiseks
ImageJ-linux64  --headless --console -macro ./ijm/RunBatch.ijm 'img/'


## -------------- vana versioon ------------------
# Kui V8 shiny's ei tööta
cont_name=shiny-r-studio
docker exec -ti -u 0 ${cont_name} sh -c ' \
printf "deb http://archive.debian.org/debian/ jessie main\ndeb-src http://archive.debian.org/debian/ jessie main\ndeb http://security.debian.org/debian-security/ jessie/updates main\ndeb-src http://security.debian.org/debian-security/ jessie/updates main" > /etc/apt/sources.list && \
apt-get update && \
apt-get install -y --no-install-recommends  --force-yes \
libv8-dev libnlopt-dev libgeos-dev'

# V8 paketi installimiseks Ubuntu 20.04 korral arvutis uthp
sudo apt-get install libssl1.1=1.1.1f-1ubuntu2
sudo apt-get install libnode-dev
#


## Täiendused !!!!

docker exec -ti shiny-r-studio bash -c "
  apt update
  apt -y upgrade
  apt install -y iputils-ping libpq-dev postgresql-client build-essential pkg-config libssl-dev \
  libcairo2 libcairo2-dev libxt-dev libx11-dev libfreetype6-dev libharfbuzz-dev libpng-dev \
  libjpeg-dev libtiff5-dev nano netcat-traditional iproute2 libxml2-dev curl zlib1g-dev libicu-dev \
  libreadline-dev libblas-dev liblapack-dev gfortran libglpk-dev cmake ninja-build \
  libbz2-dev liblzma-dev libpcre2-dev libcurl4-openssl-dev libsqlite3-dev libspatialite-dev \
  gdal-bin libgdal-dev libgeos-dev libgeos++-dev proj-bin libproj-dev libudunits2-dev   
  apt -y autoremove
"

docker exec -ti shiny-r-studio bash -c "
# units (vajab libudunits2-dev)
sudo bash -lc 'R -q -e \"install.packages(\"units\", repos=\"https://cloud.r-project.org\", Ncpus=parallel::detectCores())\"'
# sf (kasutab GDAL/GEOS/PROJ)
sudo bash -lc 'R -q -e \"install.packages(\"sf\", repos=\"https://cloud.r-project.org\", Ncpus=parallel::detectCores())\"'
# lwgeom (vajab liblwgeom-dev + sf)
sudo bash -lc 'R -q -e \"install.packages(\"lwgeom\", repos=\"https://cloud.r-project.org\", Ncpus=parallel::detectCores())\"'
# lõpuks stplanr
sudo bash -lc 'R -q -e \"install.packages(\"stplanr\", repos=\"https://cloud.r-project.org\", Ncpus=parallel::detectCores())\"'
"